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Publicada porBelén Acosta Castillo Modificado hace 9 años
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Bioinformática Predicción estructural y funcional Máster Biomedicina 2009-10
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Programa Introducción Bases de datos biológicas Comparación de secuencia y búsqueda de homología Predicción funcional Predicción estructural Seminarios http://mmb.pcb.ub.es/MBIOMED/bioinformatica/
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Material y Evaluación Ejercicios y presentaciones http://mmb.pcb.ub.es/MBIOMED/bioinformatica Campus Virtual Evaluación. Pruebas prácticas 12 Nov. “control” 24 Nov. “secuencia” 25 Nov. “estructura”
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Bioinformatics intuitive definition Informatic tools that can suggest solutions to biological problems
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You really understand a system when you are able to represent it using a mathematical equation Lord Kelvin Living organisms are the most perverse of chemical systems Coulson
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FEBRUARY 2001: Consorcio Público Celera Genomics NOVIEMBRE 2001 : Ohio State University
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Sequencing Paralel / combinatorial synthesis HT Screening Separation Purification Crystallization...
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DATAINFORMATION
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Bioinformatics Genome projects Functional genomics Structural genomics Proteomics, systems biology Molecular recognition …
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Genome projects Massive sequencing Massive sequencing Genome Determinations Genome Determinations Genome Annotation Genomics and disease
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http://www.ncbi.nlm.nih.gov/genomes/static/gpstat.html + 2124 Virus
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http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=960 6&build=previous
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Functional genomics DNA-chips …. DNA-chips …. Image processing Data mining Expression profiles Expression profiles Statistical analysis
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Statistical analysis Clustering Machine learning methods Ontology
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http://www.ncbi.nlm.nih.gov/geo/
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Structural genomics X Ray NMR X Ray NMR Homology 3D Structure 3D Structure Structure selection 3D Structure 3D Structure Structure-function New biomolecules Structure-function New biomolecules Structure-function analysis Molecular modeling
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Recognition ability is the basis of biological function 3D structure is key for recognition
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Rosalyn Franklin Mapa difracción B-DNA
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COX-2 ADA XOFKBP
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ATP (Mg) - ACV
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Dynamic properties. Molecular recognition requires structural adjustment
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Proteomics Proteoma Metaboloma System biology
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HUMAN PLASMA
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http://www.imb-jena.de/jcb/ppi/
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Barabasi et al. (and others), since 1999Pazos et al., EMBO Reports 2003
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Combinatorial chemistry/HTS Massive Synthesis and analysis Massive Synthesis and analysis New drugs Library design Molecular Modeling Docking Virtual screening
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Prediction. Possible scenarios 1. Homology can be recognized using sequence comparison tools or protein family databases (blast, clustal, pfam,...). Structural and functional predictions are feasible 2. Homology exist but cannot be recognized easily (psi- blast, threading) Low resolution fold predictions are possible. No functional information. 3. No homology 1D predictions. Sequence motifs. Limited functional prediction. Ab-initio prediction
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Reminder Bioinformatics “suggests” answers, experimental proof is still necessary Bioinformatics can “save work”. Hypothesis can be tested “in silico” Bioinformatics can do impossible experiments However, never trust bioinformatics
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